Thursday, March 24, 2011

[TECH] juggernaut-asm: An out-of-core sequence assembler

Development updates on the juggernaut-asm project.I'm now branching off the trunk to implement the feature which avoids using the UNIX sort. To checkout the main branch as follows. This is the version of the code I used to obtain the results on 4million reads which the in-memory algorithm of Velvet could not handle.

cvs co .

The code to replace the unix sort being developed in the branch name 'replace-unix-sort'.

cvs co -r replace-unix-sort .

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